SoftAlign: End-to-end protein structures alignment.
Jeanne Trinquier, Samantha Petti, Sukhwan Park, Kithmini Herath, Michel van Kempen, Shihao Feng, Johannes Söding, Martin Steinegger, Sergey Ovchinnikov. bioRxiv, 2025.

Towards Ultrafast Quantitative Phase Imaging via Differentiable Microscopy.
Udith Haputhanthri, Kithmini Herath, Ramith Hettiarachchi, Hasindu Kariyawasam, Azeem Ahmad, Balpreet S Ahluwalia, Ganesh Acharya, Chamira US Edussooriya, Dushan N Wadduwage. Biomedical Optics Express, 2024.

Deep Optical Coding Design in Computational Imaging: a data-driven framework.
Henry Arguello, Jorge Bacca, Hasindu Kariyawasam, Edwin Vargas, Miguel Marquez, Ramith Hettiarachchi, Hans Garcia, Kithmini Herath, Udith Haputhanthri, Balpreet S. Ahluwalia, Peter So, Dushan N. Wadduwage, Chamira U. S. Edussooriya. IEEE Signal Processing Magazine Special Issue on Physics-Driven Machine Learning for Computational Imaging, 2023.

Differentiable Microscopy Designs an All Optical Phase Retrieval Microscope.
Kithmini Herath, Udith Haputhanthri, Ramith Hettiarachchi, Hasindu Kariyawasam, Raja N. Ahmad, Azeem Ahmad, Balpreet S. Ahluwalia, Chamira U. S. Edussooriya, Dushan Wadduwage. arXiv, 2022.

MyoSpring: 3D Printing Mechanomyographic Sensors for Subtle Finger Gesture Recognition
Stephen Shiao-ru Lin, Nisal M. Gamage, Kithmini Herath, Anusha Withana. Sixteenth International Conference on Tangible, Embedded, and Embodied Interaction (TEI), 2022.

A Novel Transfer Learning-Based Approach for Screening Pre-existing Heart Diseases Using Synchronized ECG Signals and Heart Sounds
Ramith Hettiarachchi, Udith Haputhanthri, Kithmini Herath, Hasindu Kariyawasam, Shehan Munasinghe, Kithmin Wickramasinghe, Duminda Samarasinghe, Anjula De Silva, Chamira U. S. Edussooriya. IEEE International Symposium on Circuits and Systems (ISCAS), 2021.